{"id":34900,"date":"2010-12-14T04:25:06","date_gmt":"2010-12-14T12:25:06","guid":{"rendered":"http:\/\/blogs.discovermagazine.com\/gnxp\/?p=8443"},"modified":"2010-12-16T03:05:14","modified_gmt":"2010-12-16T11:05:14","slug":"re-visualizing-european-ancestry","status":"publish","type":"post","link":"https:\/\/www.razib.com\/wordpress\/2010\/12\/14\/re-visualizing-european-ancestry\/","title":{"rendered":"Re-visualizing European ancestry"},"content":{"rendered":"

I decided to take the Dodecad<\/a> ADMIXTURE results at K = 10, and redo some of the bar plots, as well as some scatter plots relating the different ancestral components by population. Don’t try to pick out fine-grained details, see what jumps out in a gestalt<\/em> fashion. I removed most of the non-European populations to focus on Western Europeans, with a few outgroups for reference.<\/p>\n

Here’s a table of the correlations (I bolded the ones I thought were interesting):<\/p>\n\n\n<\/col>\n<\/col>\n<\/col>\n<\/col>\n<\/col>\n<\/col>\n<\/col>\n<\/col>\n<\/col>\n<\/col>\n<\/col>\n<\/colgroup>\n\n\n\n\n\n\n\n\n\n\n\n

\n<\/span><\/td>\n		W Asian<\/span><\/td>\nNW African<\/span><\/td>\nS Europe<\/span><\/td>\nNE Asian<\/span><\/td>\nSW Asian<\/span><\/td>\nE Asian<\/span><\/td>\nN European<\/span><\/td>\nW African<\/span><\/td>\nE African<\/span><\/td>\nS Asian<\/span><\/td>\n<\/tr>\n
W Asian<\/span><\/td>\n*<\/span><\/td>\n-0.01<\/span><\/td>\n-0.18<\/span><\/strong><\/td>\n0.04<\/span><\/td>\n0.81<\/span><\/strong><\/td>\n0.59<\/span><\/td>\n-0.64<\/span><\/strong><\/td>\n0.39<\/span><\/td>\n0.2<\/span><\/td>\n0.04<\/span><\/td>\n<\/tr>\n
NW African<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n0.19<\/span><\/td>\n-0.16<\/span><\/td>\n0.23<\/span><\/td>\n-0.09<\/span><\/td>\n-0.19<\/span><\/td>\n0.26<\/span><\/td>\n0.67<\/span><\/td>\n-0.11<\/span><\/td>\n<\/tr>\n
S European<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n-0.38<\/span><\/td>\n-0.03<\/span><\/strong><\/td>\n-0.27<\/span><\/td>\n-0.42<\/span><\/strong><\/td>\n-0.11<\/span><\/td>\n-0.02<\/span><\/td>\n-0.36<\/span><\/td>\n<\/tr>\n
NE Asian<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n-0.06<\/span><\/td>\n0.5<\/span><\/td>\n0.26<\/span><\/td>\n-0.04<\/span><\/td>\n-0.1<\/span><\/td>\n-0.07<\/span><\/td>\n<\/tr>\n
SW Asian<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n0.21<\/span><\/td>\n-0.62<\/span><\/strong><\/td>\n0.74<\/span><\/td>\n0.59<\/span><\/td>\n-0.13<\/span><\/td>\n<\/tr>\n
E Asian<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n-0.27<\/span><\/td>\n0.08<\/span><\/td>\n0<\/span><\/td>\n0.14<\/span><\/td>\n<\/tr>\n
N European<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n-0.34<\/span><\/td>\n-0.28<\/span><\/td>\n-0.31<\/span><\/td>\n<\/tr>\n
W African<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n0.86<\/span><\/td>\n-0.04<\/span><\/td>\n<\/tr>\n
E African<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n*<\/span><\/td>\n-0.07<\/span><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

<\/span>\"dodenorth\"\"dodsouth\"\"dodswasian\"\"dodwest\"\"scatternorthwest\"\"scattersouthnorth\"\"scattersouthwest\"\"scatterwestasiansouthwest\"<\/p>\n

<\/p>\n","protected":false},"excerpt":{"rendered":"

I decided to take the Dodecad ADMIXTURE results at K = 10, and redo some of the bar plots, as well as some scatter plots relating the different ancestral components by population. Don’t try to pick out fine-grained details, see what jumps out in a gestalt fashion. I removed most of the non-European populations to […]<\/p>\n","protected":false},"author":12,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[194,780,877,104,4,82,22],"tags":[],"class_list":["post-34900","post","type-post","status-publish","format-standard","hentry","category-archaeogenetics","category-dodecad","category-europe","category-european-genetics","category-genetics","category-genomics","category-geography"],"_links":{"self":[{"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/posts\/34900","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/users\/12"}],"replies":[{"embeddable":true,"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/comments?post=34900"}],"version-history":[{"count":5,"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/posts\/34900\/revisions"}],"predecessor-version":[{"id":35048,"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/posts\/34900\/revisions\/35048"}],"wp:attachment":[{"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/media?parent=34900"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/categories?post=34900"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/tags?post=34900"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}