{"id":37736,"date":"2011-02-16T13:20:20","date_gmt":"2011-02-16T21:20:20","guid":{"rendered":"http:\/\/blogs.discovermagazine.com\/gnxp\/?p=9967"},"modified":"2011-02-23T10:33:35","modified_gmt":"2011-02-23T18:33:35","slug":"eurasia-mozabites-papuans","status":"publish","type":"post","link":"https:\/\/www.razib.com\/wordpress\/2011\/02\/16\/eurasia-mozabites-papuans\/","title":{"rendered":"Eurasia + Mozabites + Papuans"},"content":{"rendered":"

I’m in a hurry right now, and won’t be posting much this week. But<\/em><\/strong>, I thought I’d dump some of the ADMIXTURE runs I have. This is one with 80,000 markers, and Eurasian populations, Papuans and Mozabites. I removed the New World and Africa to constrain the variance space. This time I’ve labelled the ancestral components, but do not take them totally literally.<\/strong> I think in the future I might just remove the Kalash to see what happens. This is K = 7. Not too busy, but I think enough K’s to separate out the various West Eurasian groups. Additionally I’ve put the genetic distances, Fst, below, and, visualized them on an MDS. Nothing too surprising.<\/p>\n<\/p>\n

Fst<\/strong><\/p>\n

Northeast Asian
\nSouth Asian
\nEuropean
\nWest Asian
\nKalash
\nSoutheast Asian
\nPapuan<\/p>\n

Northeast Asian
\n0
\n0.1
\n0.13
\n0.142
\n0.137
\n0.052
\n0.225<\/p>\n

South Asian
\n0.1
\n0
\n0.058
\n0.07
\n0.066
\n0.097
\n0.201<\/p>\n

European
\n0.13
\n0.058
\n0
\n0.056
\n0.075
\n0.132
\n0.236<\/p>\n

West Asian
\n0.142
\n0.07
\n0.056
\n0
\n0.098
\n0.139
\n0.238<\/p>\n

Kalash
\n0.137
\n0.066
\n0.075
\n0.098
\n0
\n0.136
\n0.243<\/p>\n

Southeast Asian
\n0.052
\n0.097
\n0.132
\n0.139
\n0.136
\n0
\n0.214<\/p>\n

Papuan
\n0.225
\n0.201
\n0.236
\n0.238
\n0.243
\n0.214
\n0<\/p>\n

\"\"<\/a><\/p>\n

\"\"<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"

I’m in a hurry right now, and won’t be posting much this week. But, I thought I’d dump some of the ADMIXTURE runs I have. This is one with 80,000 markers, and Eurasian populations, Papuans and Mozabites. I removed the New World and Af…<\/p>\n","protected":false},"author":12,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[290,4,82],"tags":[],"class_list":["post-37736","post","type-post","status-publish","format-standard","hentry","category-admixture","category-genetics","category-genomics"],"_links":{"self":[{"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/posts\/37736","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/users\/12"}],"replies":[{"embeddable":true,"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/comments?post=37736"}],"version-history":[{"count":8,"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/posts\/37736\/revisions"}],"predecessor-version":[{"id":37998,"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/posts\/37736\/revisions\/37998"}],"wp:attachment":[{"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/media?parent=37736"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/categories?post=37736"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.razib.com\/wordpress\/wp-json\/wp\/v2\/tags?post=37736"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}